Variant report

Variant	rs35973239
Chromosome Location	chr3:157212749-157212750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157211587..157213759-chr3:157215822..157218040,2	K562	blood:

Variant related genes	Relation type
ENSG00000197415	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1009872	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10513515	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114237	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16827662	0.84[EUR][1000 genomes]
rs16827705	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16827727	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1822398	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35638371	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57566161	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58178116	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158515	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158516	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158523	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158525	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158527	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158534	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73158539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73158545	0.86[EUR][1000 genomes]
rs73158547	0.86[EUR][1000 genomes]
rs73158550	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157194600-157217000	Weak transcription	Pancreas	Pancrea
2	chr3:157210200-157214000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:157210400-157212800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:157210600-157214000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:157210600-157217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:157210800-157213800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:157211000-157213000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:157211000-157213200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157211000-157216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:157211200-157213200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157211200-157213200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:157211200-157213400	Enhancers	Osteobl	bone
13	chr3:157211200-157214000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157211400-157213200	Enhancers	HSMM	muscle
15	chr3:157211400-157213200	Genic enhancers	HUVEC	blood vessel
16	chr3:157211400-157213400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:157211600-157213200	Enhancers	NH-A	brain
18	chr3:157211600-157214200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157211800-157212800	Enhancers	NHLF	lung
20	chr3:157211800-157214600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:157212000-157212800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:157212000-157213200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:157212000-157213200	Enhancers	HSMMtube	muscle
24	chr3:157212000-157213800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:157212000-157214000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:157212000-157214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:157212000-157216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:157212200-157213000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:157212200-157216200	Weak transcription	NHDF-Ad	bronchial
30	chr3:157212200-157217200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:157212400-157213200	Enhancers	Primary hematopoietic stem cells	blood
32	chr3:157212400-157213400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:157212400-157214000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:157212400-157216200	Weak transcription	Fetal Kidney	kidney
35	chr3:157212400-157216200	Weak transcription	Fetal Lung	lung
36	chr3:157212600-157212800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:157212600-157213000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:157212600-157216400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:157212600-157216800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:157212600-157217000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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