Variant report

Variant	rs16827772
Chromosome Location	chr1:150852054-150852055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:150851999-150852091	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150846965..150851829-chr1:150851958..150856513,6	MCF-7	breast:
2	chr1:150805087..150807211-chr1:150850902..150853301,2	MCF-7	breast:

Variant related genes	Relation type
ARNT	TF binding region
ENSG00000143437	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157132	0.89[YRI][hapmap]
rs10305685	0.97[MKK][hapmap];0.84[YRI][hapmap]
rs10305751	0.95[MKK][hapmap]
rs16832391	0.85[YRI][hapmap]
rs16832604	0.88[YRI][hapmap]
rs7547614	0.85[YRI][hapmap]
rs9988459	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv2810	chr1:150835173-150879869	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150849200-150852800	Weak transcription	NHLF	lung
2	chr1:150849600-150853400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:150849600-150853600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:150849800-150853000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:150849800-150853000	Weak transcription	Fetal Lung	lung
6	chr1:150849800-150853400	Weak transcription	HSMM	muscle
7	chr1:150849800-150853600	Weak transcription	HSMMtube	muscle
8	chr1:150849800-150853600	Weak transcription	NH-A	brain
9	chr1:150849800-150854200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:150850000-150852600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:150850000-150853000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:150850000-150853400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:150850000-150853400	Weak transcription	Adipose Nuclei	Adipose
14	chr1:150850000-150853400	Weak transcription	Placenta	Placenta
15	chr1:150850000-150853400	Weak transcription	HMEC	breast
16	chr1:150850000-150853600	Weak transcription	NHEK	skin
17	chr1:150850000-150855200	Weak transcription	GM12878-XiMat	blood
18	chr1:150850200-150852400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:150850200-150853400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:150850200-150853400	Weak transcription	Hela-S3	cervix
21	chr1:150850200-150853600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:150850400-150852600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:150850400-150853800	Weak transcription	Liver	Liver
24	chr1:150851000-150852600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:150851200-150853000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:150851200-150854200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:150851400-150853200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:150851400-150853400	Enhancers	Osteobl	bone
29	chr1:150851600-150852400	Enhancers	K562	blood
30	chr1:150851600-150853400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:150851600-150853400	Enhancers	NHDF-Ad	bronchial
32	chr1:150851800-150855200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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