Variant report

Variant	rs16827874
Chromosome Location	chr2:151000336-151000337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:150994702..150996343-chr2:150998430..151000789,2	MCF-7	breast:
2	chr2:150990310..150992459-chr2:150998198..151000635,2	MCF-7	breast:
3	chr2:151000017..151002237-chr2:151341838..151343346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16827844	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16827880	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58383593	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6710266	0.83[AMR][1000 genomes]
rs6732782	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73968326	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7577813	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150993800-151000400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:150996800-151002400	Enhancers	NH-A	brain
3	chr2:150997000-151001000	Enhancers	NHEK	skin
4	chr2:150997000-151001800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:150997200-151002000	Enhancers	HMEC	breast
6	chr2:150997400-151002000	Enhancers	Osteobl	bone
7	chr2:150997600-151001400	Enhancers	NHDF-Ad	bronchial
8	chr2:150997600-151001600	Weak transcription	Fetal Brain Male	brain
9	chr2:150997600-151002000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:150997600-151002200	Enhancers	HSMM	muscle
11	chr2:150997800-151000800	Enhancers	NHLF	lung
12	chr2:150997800-151002000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:150998800-151001400	Weak transcription	Fetal Brain Female	brain
14	chr2:150999000-151002000	Enhancers	HUVEC	blood vessel
15	chr2:150999200-151000800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:150999400-151001800	Enhancers	A549	lung
17	chr2:150999600-151000600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:150999600-151002000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:151000000-151001200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:151000000-151001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:151000000-151002600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:151000200-151000600	Weak transcription	HSMMtube	muscle

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