Variant report

Variant	rs73968326
Chromosome Location	chr2:150995506-150995507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:150990438..150993120-chr2:150995084..150997396,2	MCF-7	breast:
2	chr2:150994702..150996343-chr2:150998430..151000789,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16827844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827874	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16827880	1.00[AMR][1000 genomes]
rs58383593	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6710266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6732782	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7577813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150984800-150997800	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:150990000-150995800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:150990600-150998000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:150991000-150997000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:150991000-150997600	Weak transcription	HSMM	muscle
6	chr2:150991200-150999600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:150991400-150996600	Weak transcription	HUVEC	blood vessel
8	chr2:150991400-150997800	Weak transcription	NHLF	lung
9	chr2:150991800-150996800	Weak transcription	NH-A	brain
10	chr2:150992000-150995600	Enhancers	NHEK	skin
11	chr2:150992000-150997200	Weak transcription	Dnd41	blood
12	chr2:150992200-150998200	Weak transcription	HSMMtube	muscle
13	chr2:150993000-150997800	Weak transcription	Fetal Lung	lung
14	chr2:150993200-150997800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:150993400-150995600	Enhancers	HMEC	breast
16	chr2:150993800-150997400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:150993800-150997600	Weak transcription	NHDF-Ad	bronchial
18	chr2:150993800-151000400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:150994200-150996800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:150994200-150997800	Weak transcription	Esophagus	oesophagus
21	chr2:150994400-150997200	Weak transcription	A549	lung
22	chr2:150994600-150995600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:150994800-150995600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:150994800-150997400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:150994800-150999200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:150995200-150995600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:150995200-150995600	Enhancers	Osteobl	bone
28	chr2:150995400-150996000	Enhancers	Rectal Mucosa Donor 31	rectum

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