Variant report

Variant	rs16828590
Chromosome Location	chr2:187884629-187884630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187880614..187882392-chr2:187883070..187885424,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16828645	1.00[YRI][hapmap]
rs16828669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4516390	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4600612	0.89[YRI][hapmap]
rs4614897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56067996	0.91[AFR][1000 genomes]
rs58601170	0.81[AFR][1000 genomes]
rs6725883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6727719	0.89[YRI][hapmap]
rs6756559	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979692	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979698	0.88[AFR][1000 genomes]
rs73979701	0.91[AFR][1000 genomes]
rs73981116	0.91[AFR][1000 genomes]
rs966879	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv528437	chr2:187778830-187907901	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv999207	chr2:187787121-187924667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv536084	chr2:187787121-187924667	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv875553	chr2:187856937-188067355	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875554	chr2:187873808-187964942	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv834486	chr2:187876328-188032965	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187875800-187885200	Weak transcription	Psoas Muscle	Psoas

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