Variant report
Variant | rs73979643 |
---|---|
Chromosome Location | chr2:187945218-187945219 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16828590 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16828669 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4516390 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4614897 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56067996 | 0.91[AFR][1000 genomes] |
rs58601170 | 0.81[AFR][1000 genomes] |
rs6725883 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6756559 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979609 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979611 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979619 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979678 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979692 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979693 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979694 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73979698 | 0.88[AFR][1000 genomes] |
rs73979701 | 0.91[AFR][1000 genomes] |
rs73981116 | 0.91[AFR][1000 genomes] |
rs966879 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949700 | chr2:187713412-188361211 | Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv875553 | chr2:187856937-188067355 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv875554 | chr2:187873808-187964942 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv834486 | chr2:187876328-188032965 | Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv431857 | chr2:187930023-188098798 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:187943600-187945800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
2 | chr2:187945200-187946200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |