Variant report

Variant	rs16828604
Chromosome Location	chr2:187942148-187942149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16823870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16828504	1.00[AMR][1000 genomes]
rs16828626	0.88[AFR][1000 genomes]
rs16828670	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56660656	1.00[AMR][1000 genomes]
rs57108035	1.00[AMR][1000 genomes]
rs58719230	1.00[AMR][1000 genomes]
rs61342107	1.00[AMR][1000 genomes]
rs73038883	0.84[AFR][1000 genomes]
rs73039831	1.00[AMR][1000 genomes]
rs73039853	1.00[AMR][1000 genomes]
rs73041530	1.00[AMR][1000 genomes]
rs73041541	1.00[AMR][1000 genomes]
rs73041542	1.00[AMR][1000 genomes]
rs73041546	1.00[AMR][1000 genomes]
rs73043611	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049439	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv875553	chr2:187856937-188067355	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875554	chr2:187873808-187964942	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv834486	chr2:187876328-188032965	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv431857	chr2:187930023-188098798	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187940600-187943000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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