Variant report

Variant	rs73039831
Chromosome Location	chr2:187758219-187758220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16823870	1.00[AMR][1000 genomes]
rs16828504	1.00[AMR][1000 genomes]
rs16828604	1.00[AMR][1000 genomes]
rs56660656	1.00[AMR][1000 genomes]
rs57108035	1.00[AMR][1000 genomes]
rs58719230	1.00[AMR][1000 genomes]
rs61342107	1.00[AMR][1000 genomes]
rs73039853	1.00[AMR][1000 genomes]
rs73041530	1.00[AMR][1000 genomes]
rs73041541	1.00[AMR][1000 genomes]
rs73041542	1.00[AMR][1000 genomes]
rs73041546	1.00[AMR][1000 genomes]
rs73043611	1.00[AMR][1000 genomes]
rs73043628	1.00[AMR][1000 genomes]
rs73043629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187756000-187758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:187756400-187758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:187757000-187759200	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links