Variant report

Variant	rs16829032
Chromosome Location	chr2:149348518-149348519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr2:149348242-149348522	GM12878	blood:	n/a	chr2:149348381-149348392 chr2:149348493-149348501
2	RUNX3	chr2:149348236-149348532	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:149348211..149350495-chr2:149361167..149362681,2	MCF-7	breast:
2	chr2:149347129..149348896-chr2:149350867..149353589,2	K562	blood:

Variant related genes	Relation type
ENSG00000232238	TF binding region
ENSG00000232238	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1448898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55747459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56391003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58256908	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58826437	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59139381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59986440	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61277958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6430328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965509	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73965510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965561	1.00[EUR][1000 genomes]
rs73965588	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965589	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965591	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7557220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149343800-149350400	Weak transcription	Fetal Lung	lung
2	chr2:149348000-149348600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:149348200-149348600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:149348200-149348600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:149348200-149348600	Enhancers	NHEK	skin

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