Variant report

Variant	rs61277958
Chromosome Location	chr2:149318569-149318570
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1448898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16829032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55747459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56391003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58256908	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58826437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59139381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59986440	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6430328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965509	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73965510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965522	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965561	1.00[EUR][1000 genomes]
rs73965588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73965591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7557220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762913	chr2:149249683-149345487	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv527539	chr2:149283070-149330251	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149312600-149319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:149312800-149318800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:149316200-149318800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:149316600-149318800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:149317200-149319800	Enhancers	Fetal Lung	lung
6	chr2:149317400-149319200	Enhancers	Placenta	Placenta
7	chr2:149318000-149318800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:149318000-149318800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:149318000-149320200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:149318200-149319000	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:149318200-149319600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:149318400-149319200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links