Variant report

Variant	rs16829163
Chromosome Location	chr3:118645201-118645202
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11927719	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487299	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12489856	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12636639	0.88[CEU][hapmap]
rs1369583	0.88[CEU][hapmap]
rs1879552	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110368	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110369	0.89[CEU][hapmap];0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2160052	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs2215811	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs2866317	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs36052974	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58464946	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6765168	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795936	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6802658	0.89[CEU][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73183699	0.92[EUR][1000 genomes]
rs73185803	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7610212	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7638463	0.88[CEU][hapmap]
rs9848979	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs9854506	0.91[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
3	chr3:118642200-118647000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:118642200-118647200	Weak transcription	Ovary	ovary
5	chr3:118642800-118651400	Weak transcription	Brain Angular Gyrus	brain
6	chr3:118643200-118651600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:118643600-118647000	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:118644600-118645400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:118644600-118649000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:118645000-118645400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:118645000-118645400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:118645000-118645600	Enhancers	Brain Anterior Caudate	brain
13	chr3:118645000-118646000	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:118645200-118645600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:118645200-118651200	Weak transcription	Brain Substantia Nigra	brain
16	chr3:118645200-118661600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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