Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11927719	0.92[EUR][1000 genomes]
rs12487299	0.83[EUR][1000 genomes]
rs12489856	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16829163	0.92[EUR][1000 genomes]
rs1879552	0.91[EUR][1000 genomes]
rs2110368	0.91[EUR][1000 genomes]
rs2110369	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2160052	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2215811	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2866317	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36052974	0.91[EUR][1000 genomes]
rs58464946	0.92[EUR][1000 genomes]
rs6765168	0.82[EUR][1000 genomes]
rs6782002	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6795936	0.88[EUR][1000 genomes]
rs6802658	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73185803	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7610212	0.92[EUR][1000 genomes]
rs9848979	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9854506	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:118604400-118620000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:118606400-118613200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:118608400-118621400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:118610000-118618200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:118610200-118613600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:118610600-118612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:118610800-118613600	Weak transcription	Aorta	Aorta
12	chr3:118611200-118612400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search: