Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151895774..151898411-chr2:151900217..151902531,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1485124	0.80[AFR][1000 genomes]
rs1485125	0.80[AFR][1000 genomes]
rs1485127	0.80[AFR][1000 genomes]
rs1485132	0.85[JPT][hapmap]
rs16829302	0.80[ASN][1000 genomes]
rs16829328	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16829335	0.85[AFR][1000 genomes]
rs16829353	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2086916	0.87[JPT][hapmap]
rs2341849	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57729442	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62167197	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62167198	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62167199	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62167200	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62167231	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62167233	0.83[ASN][1000 genomes]
rs62167235	0.84[EUR][1000 genomes]
rs7604218	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9678782	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151890400-151896400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:151890600-151899600	Weak transcription	Osteobl	bone
3	chr2:151891000-151896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:151891400-151906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:151895400-151898000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:151895400-151900000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:151895800-151897000	Enhancers	NHDF-Ad	bronchial
8	chr2:151896000-151896200	Enhancers	Esophagus	oesophagus
9	chr2:151896000-151898200	Enhancers	Fetal Lung	lung
10	chr2:151896000-151901000	Enhancers	HMEC	breast

Quick Search: