Variant report

Variant	rs62167233
Chromosome Location	chr2:151920022-151920023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151918025..151920137-chr2:151922647..151924328,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16829328	0.83[ASN][1000 genomes]
rs16829331	0.83[ASN][1000 genomes]
rs16829353	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2341849	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57729442	0.82[ASN][1000 genomes]
rs62167197	0.81[ASN][1000 genomes]
rs62167198	0.82[ASN][1000 genomes]
rs62167199	0.83[ASN][1000 genomes]
rs62167200	0.83[ASN][1000 genomes]
rs62167231	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62167235	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151919400-151920400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:151919400-151920800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:151919400-151920800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:151919400-151920800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:151919400-151920800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:151919400-151920800	Enhancers	NHEK	skin
7	chr2:151919400-151921600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:151919600-151920200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:151919600-151920200	Enhancers	Osteobl	bone
10	chr2:151919600-151920400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr2:151919600-151920600	Enhancers	HMEC	breast
12	chr2:151919600-151920800	Enhancers	NHDF-Ad	bronchial
13	chr2:151919600-151921000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:151919800-151920200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr2:151919800-151920200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:151919800-151920200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:151919800-151920200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:151919800-151920200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:151919800-151920200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr2:151919800-151920200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:151919800-151920200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:151919800-151920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:151919800-151920200	Enhancers	HUVEC	blood vessel
24	chr2:151919800-151920400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr2:151919800-151920400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:151919800-151920600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr2:151919800-151920800	Enhancers	Fetal Lung	lung
28	chr2:151920000-151920800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr2:151920000-151921600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:151920000-151926200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:151920000-151926400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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