Variant report

Variant	rs16829835
Chromosome Location	chr2:152123703-152123704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152116911..152121023-chr2:152121243..152124083,4	MCF-7	breast:
2	chr2:152117885..152120155-chr2:152120672..152124078,4	K562	blood:

Variant related genes	Relation type
ENSG00000184898	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12621525	0.86[CHB][hapmap]
rs16829823	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16829828	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16829833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289872	0.89[ASN][1000 genomes]
rs289873	0.89[ASN][1000 genomes]
rs289874	0.89[ASN][1000 genomes]
rs289875	0.89[ASN][1000 genomes]
rs289876	0.89[ASN][1000 genomes]
rs289881	0.92[ASN][1000 genomes]
rs289884	0.92[ASN][1000 genomes]
rs289885	0.92[ASN][1000 genomes]
rs289888	0.92[ASN][1000 genomes]
rs289889	0.92[ASN][1000 genomes]
rs289890	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.92[ASN][1000 genomes]
rs289891	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs289917	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs289920	0.85[ASN][1000 genomes]
rs289925	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs289926	0.92[ASN][1000 genomes]
rs391852	0.89[ASN][1000 genomes]
rs4665120	0.86[CHB][hapmap]
rs57327601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv834417	chr2:151980473-152154950	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1012891	chr2:152019809-152306897	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1012139	chr2:152114637-152389516	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv1011339	chr2:152114637-152392940	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152118400-152126400	Weak transcription	Spleen	Spleen
2	chr2:152118600-152126400	Weak transcription	Lung	lung
3	chr2:152118600-152126600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:152118600-152133800	Weak transcription	Gastric	stomach
5	chr2:152118600-152142800	Weak transcription	Small Intestine	intestine
6	chr2:152118800-152125000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:152118800-152126200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:152118800-152126200	Weak transcription	Placenta	Placenta
9	chr2:152118800-152126400	Weak transcription	Fetal Intestine Large	intestine
10	chr2:152118800-152126400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:152118800-152126400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:152118800-152126400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:152118800-152126600	Weak transcription	Esophagus	oesophagus
14	chr2:152118800-152129800	Weak transcription	Colonic Mucosa	Colon
15	chr2:152118800-152130000	Weak transcription	Fetal Stomach	stomach
16	chr2:152118800-152130600	Weak transcription	Fetal Intestine Small	intestine
17	chr2:152118800-152133800	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:152118800-152134000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:152118800-152144000	Weak transcription	Stomach Mucosa	stomach
20	chr2:152118800-152144200	Weak transcription	Psoas Muscle	Psoas
21	chr2:152119000-152124600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:152119000-152126200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr2:152119000-152126200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:152119000-152126400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:152119000-152126400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr2:152119000-152126400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:152119000-152126400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:152119000-152126400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:152119000-152126400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:152119000-152126600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr2:152119000-152127000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:152119000-152129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:152119000-152132000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:152119000-152133600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:152119000-152134200	Weak transcription	NHLF	lung
36	chr2:152119000-152137000	Weak transcription	Osteobl	bone
37	chr2:152119000-152145000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:152119000-152145200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:152119000-152145200	Weak transcription	NHEK	skin
40	chr2:152119000-152145800	Weak transcription	HSMM	muscle
41	chr2:152119200-152126000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr2:152119200-152126400	Weak transcription	Primary T cells from cord blood	blood
43	chr2:152119200-152126400	Weak transcription	Adipose Nuclei	Adipose
44	chr2:152119200-152126600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr2:152119200-152126600	Weak transcription	Thymus	Thymus
46	chr2:152119200-152126600	Weak transcription	HUVEC	blood vessel
47	chr2:152119200-152127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr2:152119200-152128800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr2:152119200-152133200	Weak transcription	NHDF-Ad	bronchial
50	chr2:152119200-152133800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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