Variant report

Variant	rs16831467
Chromosome Location	chr3:160509773-160509774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16831470	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16831473	0.82[AFR][1000 genomes]
rs56221606	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59264052	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60447858	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6793062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877951	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73877952	0.82[AFR][1000 genomes]
rs73877961	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73877967	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7613404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618596	0.82[AFR][1000 genomes]
rs7632089	0.83[AFR][1000 genomes]
rs7633370	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7639930	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
2	chr3:160503600-160514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:160504400-160511600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:160508200-160509800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:160508600-160512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:160508600-160512600	Weak transcription	Psoas Muscle	Psoas
7	chr3:160508600-160513600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:160509000-160509800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:160509000-160510400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:160509000-160513000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:160509000-160513200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:160509000-160514000	Weak transcription	Adipose Nuclei	Adipose
13	chr3:160509000-160522600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:160509600-160512000	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:160509600-160519000	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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