Variant report

Variant	rs73877961
Chromosome Location	chr3:160522564-160522565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160521593..160523754-chr3:160526329..160528531,2	MCF-7	breast:
2	chr3:160518067..160520836-chr3:160522097..160523990,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16831467	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16831470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56221606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59264052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60447858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793062	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73877951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7613404	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7618082	0.81[AFR][1000 genomes]
rs7629154	0.81[AFR][1000 genomes]
rs7633370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7639930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
2	chr3:160509000-160522600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:160513400-160522600	Weak transcription	Pancreas	Pancrea
4	chr3:160514400-160522600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:160515400-160526400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:160518800-160522800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:160520200-160522600	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:160520200-160522600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:160520200-160522600	Weak transcription	Fetal Brain Female	brain
10	chr3:160520200-160525800	Weak transcription	Liver	Liver
11	chr3:160520200-160526000	Weak transcription	Aorta	Aorta
12	chr3:160520200-160526000	Weak transcription	Brain Angular Gyrus	brain
13	chr3:160520200-160526400	Weak transcription	Stomach Mucosa	stomach
14	chr3:160520400-160522600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:160520400-160522600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:160520400-160522600	Weak transcription	Gastric	stomach
17	chr3:160520400-160522600	Weak transcription	Left Ventricle	heart
18	chr3:160520400-160522600	Weak transcription	Lung	lung
19	chr3:160520400-160522600	Weak transcription	NHDF-Ad	bronchial
20	chr3:160520400-160526400	Weak transcription	Brain Anterior Caudate	brain
21	chr3:160520400-160529600	Weak transcription	Colonic Mucosa	Colon
22	chr3:160520800-160522600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:160521000-160522600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:160521000-160523600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:160521000-160523600	Weak transcription	Placenta	Placenta
26	chr3:160521000-160523800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:160521000-160523800	Weak transcription	Psoas Muscle	Psoas
28	chr3:160521000-160524000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:160521000-160526000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:160521000-160526000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:160521000-160526000	Weak transcription	Right Atrium	heart
32	chr3:160521000-160526000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:160521000-160526400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:160521200-160523600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:160522000-160523200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:160522000-160523200	Enhancers	Fetal Heart	heart
37	chr3:160522000-160525200	Enhancers	Colon Smooth Muscle	Colon
38	chr3:160522200-160522800	Enhancers	Brain Germinal Matrix	brain
39	chr3:160522200-160522800	Weak transcription	Fetal Brain Male	brain
40	chr3:160522200-160524400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:160522400-160522800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr3:160522400-160522800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr3:160522400-160523400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:160522400-160523800	Enhancers	Rectal Smooth Muscle	rectum
45	chr3:160522400-160524200	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:160522400-160524400	Enhancers	Adipose Nuclei	Adipose
47	chr3:160522400-160524600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr3:160522400-160524600	Enhancers	Skeletal Muscle Female	skeletal muscle

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