Variant report

Variant	rs16831570
Chromosome Location	chr3:180152340-180152341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16831578	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57837690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61658120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61711642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041701	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635430	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180150200-180152400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:180150200-180152600	Enhancers	HMEC	breast
3	chr3:180150400-180152400	Enhancers	NHEK	skin
4	chr3:180150600-180152400	Enhancers	HUVEC	blood vessel
5	chr3:180152200-180153200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:180152200-180153200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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