Variant report

Variant	rs61658120
Chromosome Location	chr3:180150087-180150088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12106782	1.00[EUR][1000 genomes]
rs12107911	1.00[EUR][1000 genomes]
rs16831570	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831586	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831686	1.00[EUR][1000 genomes]
rs3810763	1.00[EUR][1000 genomes]
rs56301740	1.00[EUR][1000 genomes]
rs56318131	1.00[EUR][1000 genomes]
rs57837690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59499283	1.00[EUR][1000 genomes]
rs61141883	1.00[EUR][1000 genomes]
rs61289073	1.00[EUR][1000 genomes]
rs61711642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6443698	1.00[EUR][1000 genomes]
rs6789734	1.00[EUR][1000 genomes]
rs73041695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041701	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043704	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043705	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045765	1.00[EUR][1000 genomes]
rs73049978	1.00[EUR][1000 genomes]
rs73883886	1.00[EUR][1000 genomes]
rs73883891	1.00[EUR][1000 genomes]
rs7624885	1.00[EUR][1000 genomes]
rs7635430	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635719	1.00[EUR][1000 genomes]
rs9757646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180147600-180150800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180149200-180150400	Weak transcription	NHEK	skin
3	chr3:180149400-180150200	Weak transcription	HMEC	breast
4	chr3:180149800-180151600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links