Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12106782	1.00[EUR][1000 genomes]
rs12107911	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831686	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3810763	1.00[EUR][1000 genomes]
rs56301740	1.00[EUR][1000 genomes]
rs56318131	1.00[EUR][1000 genomes]
rs58976802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59259611	0.82[AFR][1000 genomes]
rs59499283	1.00[EUR][1000 genomes]
rs61141883	1.00[EUR][1000 genomes]
rs61289073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61658120	1.00[EUR][1000 genomes]
rs6443698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789734	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6800920	0.88[AFR][1000 genomes]
rs73045765	1.00[EUR][1000 genomes]
rs73045782	0.85[AFR][1000 genomes]
rs73049978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73049997	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73883886	1.00[EUR][1000 genomes]
rs73883891	1.00[EUR][1000 genomes]
rs7616161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9757646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180237000-180241000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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