Variant report

Variant	rs3810763
Chromosome Location	chr3:180328749-180328750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:180327816..180329534-chr3:180347493..180349979,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FXR1-4	chr3:180328494-180328768	NONHSAT093442

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12106782	1.00[EUR][1000 genomes]
rs12107911	1.00[EUR][1000 genomes]
rs16831686	1.00[EUR][1000 genomes]
rs56301740	1.00[EUR][1000 genomes]
rs56318131	1.00[EUR][1000 genomes]
rs59499283	1.00[EUR][1000 genomes]
rs61141883	1.00[EUR][1000 genomes]
rs61289073	1.00[EUR][1000 genomes]
rs61658120	1.00[EUR][1000 genomes]
rs6443698	1.00[EUR][1000 genomes]
rs6789734	1.00[EUR][1000 genomes]
rs73045765	1.00[EUR][1000 genomes]
rs73049978	1.00[EUR][1000 genomes]
rs73883886	1.00[EUR][1000 genomes]
rs73883891	1.00[EUR][1000 genomes]
rs7624885	1.00[EUR][1000 genomes]
rs7633174	0.87[ASW][hapmap];1.00[AMR][1000 genomes]
rs7635719	1.00[EUR][1000 genomes]
rs9757646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180320600-180330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:180320600-180337400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:180320600-180343600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:180320600-180343800	Weak transcription	Spleen	Spleen
5	chr3:180320600-180344200	Weak transcription	Esophagus	oesophagus
6	chr3:180320600-180344200	Weak transcription	Gastric	stomach
7	chr3:180320800-180344000	Weak transcription	Pancreas	Pancrea
8	chr3:180320800-180344400	Weak transcription	Aorta	Aorta
9	chr3:180321000-180329400	Weak transcription	Stomach Mucosa	stomach
10	chr3:180321000-180330200	Weak transcription	Ovary	ovary
11	chr3:180321000-180334200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:180321200-180330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:180321200-180332000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:180321200-180333000	Strong transcription	HSMM	muscle
15	chr3:180321400-180330800	Strong transcription	Placenta	Placenta
16	chr3:180321400-180331800	Strong transcription	Fetal Thymus	thymus
17	chr3:180321400-180331800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr3:180321400-180332400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr3:180321400-180333800	Weak transcription	Fetal Heart	heart
20	chr3:180321600-180331400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:180321600-180331400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:180321600-180331600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:180321600-180332000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:180321600-180332000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr3:180321600-180332200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:180321600-180332600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:180321600-180333200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:180321600-180333800	Strong transcription	Primary B cells from cord blood	blood
29	chr3:180321600-180342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:180321800-180331000	Strong transcription	Osteobl	bone
31	chr3:180321800-180331400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:180321800-180331400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:180321800-180331400	Strong transcription	Fetal Lung	lung
34	chr3:180321800-180331600	Strong transcription	NHDF-Ad	bronchial
35	chr3:180321800-180331800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:180321800-180331800	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr3:180321800-180331800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:180321800-180332000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:180321800-180332600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr3:180321800-180342400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:180322000-180329800	Strong transcription	Hela-S3	cervix
42	chr3:180322000-180331400	Strong transcription	Adipose Nuclei	Adipose
43	chr3:180322000-180331600	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:180322000-180331600	Strong transcription	HUVEC	blood vessel
45	chr3:180322000-180331600	Strong transcription	NH-A	brain
46	chr3:180322000-180331800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:180322000-180331800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:180322000-180333400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:180322200-180330400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr3:180322200-180331200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links