Variant report

Variant	rs7633174
Chromosome Location	chr3:180321862-180321863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:180321514-180321924	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
TTC14	TF binding region
ENSG00000239774	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3810763	0.87[ASW][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180320600-180325800	Weak transcription	Lung	lung
2	chr3:180320600-180327000	Weak transcription	Small Intestine	intestine
3	chr3:180320600-180330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:180320600-180337400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:180320600-180343600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:180320600-180343800	Weak transcription	Spleen	Spleen
7	chr3:180320600-180344200	Weak transcription	Esophagus	oesophagus
8	chr3:180320600-180344200	Weak transcription	Gastric	stomach
9	chr3:180320800-180322400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:180320800-180322800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:180320800-180327400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:180320800-180344000	Weak transcription	Pancreas	Pancrea
13	chr3:180320800-180344400	Weak transcription	Aorta	Aorta
14	chr3:180321000-180322000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:180321000-180322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:180321000-180322600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:180321000-180322800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:180321000-180322800	Weak transcription	Left Ventricle	heart
19	chr3:180321000-180323400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:180321000-180323600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr3:180321000-180324000	Weak transcription	Fetal Brain Male	brain
22	chr3:180321000-180325600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:180321000-180329400	Weak transcription	Stomach Mucosa	stomach
24	chr3:180321000-180330200	Weak transcription	Ovary	ovary
25	chr3:180321000-180334200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:180321200-180322000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:180321200-180322400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:180321200-180322400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:180321200-180322600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:180321200-180322600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:180321200-180322800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr3:180321200-180322800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:180321200-180322800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:180321200-180322800	Weak transcription	HSMMtube	muscle
35	chr3:180321200-180326800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:180321200-180327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:180321200-180327400	Weak transcription	Colonic Mucosa	Colon
38	chr3:180321200-180330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr3:180321200-180332000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:180321200-180333000	Strong transcription	HSMM	muscle
41	chr3:180321400-180322000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:180321400-180322000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:180321400-180322000	Weak transcription	Adipose Nuclei	Adipose
44	chr3:180321400-180322000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:180321400-180322000	Genic enhancers	Hela-S3	cervix
46	chr3:180321400-180322000	Genic enhancers	HUVEC	blood vessel
47	chr3:180321400-180322200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:180321400-180322200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:180321400-180322200	Weak transcription	Liver	Liver
50	chr3:180321400-180322200	Weak transcription	Duodenum Mucosa	Duodenum

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