Variant report

Variant	rs73049997
Chromosome Location	chr3:180247527-180247528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11915168	0.89[AFR][1000 genomes]
rs12107911	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831623	0.89[AFR][1000 genomes]
rs16831631	0.89[AFR][1000 genomes]
rs16831633	0.89[AFR][1000 genomes]
rs1982978	0.89[AFR][1000 genomes]
rs1982980	0.89[AFR][1000 genomes]
rs28849493	0.85[AFR][1000 genomes]
rs4390924	0.89[AFR][1000 genomes]
rs58475538	0.89[AFR][1000 genomes]
rs58976802	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59189320	0.89[AFR][1000 genomes]
rs59259611	0.86[AFR][1000 genomes]
rs60339377	0.80[AFR][1000 genomes]
rs61289073	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6443698	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6800920	0.81[AFR][1000 genomes]
rs73043798	0.89[AFR][1000 genomes]
rs73045721	0.89[AFR][1000 genomes]
rs73049978	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615390	0.89[AFR][1000 genomes]
rs7616161	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618551	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618861	0.88[AFR][1000 genomes]
rs7624885	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628758	0.89[AFR][1000 genomes]
rs7635719	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635826	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647297	0.89[AFR][1000 genomes]
rs7650795	0.89[AFR][1000 genomes]
rs9756688	0.86[AFR][1000 genomes]
rs9756767	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180246200-180248000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:180246800-180247600	Enhancers	Ovary	ovary
3	chr3:180246800-180248000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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