Variant report

Variant	rs16831783
Chromosome Location	chr3:180348791-180348792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9863966	1.00[EUR][1000 genomes]
rs9865590	1.00[TSI][hapmap]
rs9866861	1.00[EUR][1000 genomes]
rs9879648	1.00[EUR][1000 genomes]
rs9882377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999338	chr3:180348143-181160251	Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180329400-180349400	Weak transcription	Brain Angular Gyrus	brain
2	chr3:180331800-180363200	Weak transcription	Brain Anterior Caudate	brain
3	chr3:180332000-180349800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:180344600-180348800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:180344600-180348800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:180344600-180349200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:180344600-180349800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:180344800-180351400	Weak transcription	Fetal Brain Female	brain
9	chr3:180344800-180351600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:180345000-180352200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:180345000-180361400	Weak transcription	HSMMtube	muscle
12	chr3:180347800-180348800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:180347800-180349200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:180348000-180348800	Enhancers	HMEC	breast
15	chr3:180348000-180349000	Enhancers	NHEK	skin
16	chr3:180348000-180349200	Enhancers	HUVEC	blood vessel
17	chr3:180348600-180348800	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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