Variant report
| Variant | rs9865590 |
|---|---|
| Chromosome Location | chr3:180256646-180256647 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1532485 | 0.80[YRI][hapmap] |
| rs16831783 | 1.00[EUR][1000 genomes] |
| rs28818282 | 1.00[EUR][1000 genomes] |
| rs6770664 | 0.80[YRI][hapmap] |
| rs6772673 | 1.00[EUR][1000 genomes] |
| rs6784007 | 1.00[EUR][1000 genomes] |
| rs6803803 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73883810 | 1.00[EUR][1000 genomes] |
| rs73883833 | 1.00[EUR][1000 genomes] |
| rs7643125 | 1.00[EUR][1000 genomes] |
| rs9833910 | 1.00[EUR][1000 genomes] |
| rs9858483 | 0.80[YRI][hapmap] |
| rs9863966 | 1.00[EUR][1000 genomes] |
| rs9866861 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9879648 | 1.00[EUR][1000 genomes] |
| rs9882377 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007831 | chr3:180162003-180348203 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv536818 | chr3:180162003-180348203 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
