Variant report

Variant	rs16832097
Chromosome Location	chr1:160472908-160472909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12046037	1.00[YRI][hapmap]
rs14413	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16832206	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16832213	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16832268	1.00[AMR][1000 genomes]
rs57815015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60822342	1.00[AMR][1000 genomes]
rs61211901	1.00[AFR][1000 genomes]
rs6671061	1.00[AMR][1000 genomes]
rs6693001	1.00[AMR][1000 genomes]
rs73014367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016369	1.00[AMR][1000 genomes]
rs73016373	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018380	1.00[AMR][1000 genomes]
rs73018394	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160466200-160473000	Weak transcription	Fetal Thymus	thymus
2	chr1:160466200-160474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:160468000-160477000	ZNF genes & repeats	GM12878-XiMat	blood
4	chr1:160468800-160473000	Strong transcription	Primary T cells from cord blood	blood
5	chr1:160470800-160475400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr1:160471200-160473000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr1:160471200-160475200	Weak transcription	Placenta	Placenta
8	chr1:160471400-160474600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:160471600-160474200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:160471600-160474600	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr1:160471600-160474600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:160471800-160473800	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr1:160471800-160474600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:160472000-160475200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:160472400-160473000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:160472400-160474200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:160472600-160473200	Genic enhancers	Primary B cells from cord blood	blood
18	chr1:160472600-160473200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:160472600-160473400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:160472600-160473800	Enhancers	Thymus	Thymus
21	chr1:160472800-160474600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr1:160472800-160474800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:160472800-160474800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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