Variant report

Variant	rs12046037
Chromosome Location	chr1:160470686-160470687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10494344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11265416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11265423	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12021693	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12023225	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025909	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12026076	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12028187	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12029117	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12030215	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12030424	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12031321	0.83[ASN][1000 genomes]
rs12031547	0.86[ASN][1000 genomes]
rs12031944	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12032998	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12033791	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12034408	0.83[ASN][1000 genomes]
rs12034517	1.00[CEU][hapmap]
rs12034811	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12035059	0.81[ASN][1000 genomes]
rs12036359	0.83[ASN][1000 genomes]
rs12036361	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12041528	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12047475	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12048891	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12067121	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs14413	0.87[YRI][hapmap]
rs16832097	1.00[YRI][hapmap]
rs16832206	0.87[YRI][hapmap]
rs16832213	0.87[YRI][hapmap]
rs3737790	1.00[EUR][1000 genomes]
rs3953020	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41310140	1.00[EUR][1000 genomes]
rs56273561	0.86[EUR][1000 genomes]
rs57700636	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59461961	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59620977	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59621006	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59838583	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61211901	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73014357	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73014358	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73014361	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73014362	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73014363	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530395	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7541816	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160461200-160472600	Weak transcription	Thymus	Thymus
2	chr1:160466200-160473000	Weak transcription	Fetal Thymus	thymus
3	chr1:160466200-160474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:160466600-160471400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:160466600-160471600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:160466600-160471800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:160467000-160471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:160468000-160477000	ZNF genes & repeats	GM12878-XiMat	blood
9	chr1:160468600-160471800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr1:160468800-160473000	Strong transcription	Primary T cells from cord blood	blood
11	chr1:160469200-160472600	Strong transcription	Primary B cells from cord blood	blood
12	chr1:160469400-160470800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:160469800-160470800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:160469800-160471200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:160469800-160472400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:160470000-160470800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:160470000-160470800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr1:160470000-160471200	Enhancers	Placenta	Placenta
19	chr1:160470200-160472600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:160470400-160471200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr1:160470400-160471600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr1:160470400-160471800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:160470600-160472400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood

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