Variant report

Variant	rs59838583
Chromosome Location	chr1:160494767-160494768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10494344	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11265416	0.98[ASN][1000 genomes]
rs11265423	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021693	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12023225	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025852	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025909	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12028187	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12029117	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030215	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12030424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031321	1.00[ASN][1000 genomes]
rs12031547	0.98[ASN][1000 genomes]
rs12031944	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032998	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034408	1.00[ASN][1000 genomes]
rs12034811	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12035059	0.98[ASN][1000 genomes]
rs12036359	1.00[ASN][1000 genomes]
rs12036361	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12043457	0.81[ASN][1000 genomes]
rs12046037	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12047475	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12048891	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12067121	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3737790	0.86[EUR][1000 genomes]
rs3953020	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41310140	0.86[EUR][1000 genomes]
rs57700636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59461961	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59620977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59621006	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61211901	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73014357	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73014358	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73014361	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73014362	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73014363	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160494600-160498800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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