Variant report
| Variant | rs12034408 |
|---|---|
| Chromosome Location | chr1:160505318-160505319 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | USF1 | chr1:160504972-160505325 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | CTCF | chr1:160505180-160505330 | WERI-Rb-1 | eye: | n/a | n/a |
| 3 | RAD21 | chr1:160505058-160505367 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | KAP1 | chr1:160503897-160505771 | K562 | blood: | n/a | n/a |
| 5 | CTCF | chr1:160505031-160505357 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | CBX3 | chr1:160504562-160505392 | K562 | blood: | n/a | n/a |
| 7 | CTCF | chr1:160505160-160505450 | A549 | lung: | n/a | n/a |
| 8 | RAD21 | chr1:160504983-160505446 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | SETDB1 | chr1:160503536-160506269 | K562 | blood: | n/a | n/a |
| 10 | RAD21 | chr1:160505101-160505393 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 11 | ZNF143 | chr1:160505092-160505349 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 12 | CTCF | chr1:160505180-160505330 | GM12873 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234425 | TF binding region |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10494344 | 0.98[ASN][1000 genomes] |
| rs11265416 | 0.98[ASN][1000 genomes] |
| rs11265423 | 1.00[ASN][1000 genomes] |
| rs12021693 | 0.98[ASN][1000 genomes] |
| rs12023225 | 0.98[ASN][1000 genomes] |
| rs12025833 | 0.98[ASN][1000 genomes] |
| rs12025852 | 0.98[ASN][1000 genomes] |
| rs12025853 | 0.98[ASN][1000 genomes] |
| rs12025909 | 0.98[ASN][1000 genomes] |
| rs12026076 | 0.98[ASN][1000 genomes] |
| rs12028187 | 0.98[ASN][1000 genomes] |
| rs12029117 | 1.00[ASN][1000 genomes] |
| rs12030215 | 0.98[ASN][1000 genomes] |
| rs12030424 | 0.98[ASN][1000 genomes] |
| rs12031321 | 1.00[ASN][1000 genomes] |
| rs12031547 | 0.98[ASN][1000 genomes] |
| rs12031944 | 1.00[ASN][1000 genomes] |
| rs12032998 | 1.00[ASN][1000 genomes] |
| rs12033791 | 1.00[ASN][1000 genomes] |
| rs12034811 | 0.98[ASN][1000 genomes] |
| rs12035059 | 0.98[ASN][1000 genomes] |
| rs12036359 | 1.00[ASN][1000 genomes] |
| rs12036361 | 1.00[ASN][1000 genomes] |
| rs12041528 | 1.00[ASN][1000 genomes] |
| rs12043457 | 0.81[ASN][1000 genomes] |
| rs12046037 | 0.83[ASN][1000 genomes] |
| rs12047475 | 0.98[ASN][1000 genomes] |
| rs12048891 | 0.98[ASN][1000 genomes] |
| rs12067121 | 0.98[ASN][1000 genomes] |
| rs3953020 | 0.98[ASN][1000 genomes] |
| rs57700636 | 1.00[ASN][1000 genomes] |
| rs59461961 | 0.98[ASN][1000 genomes] |
| rs59620977 | 0.98[ASN][1000 genomes] |
| rs59621006 | 0.98[ASN][1000 genomes] |
| rs59838583 | 1.00[ASN][1000 genomes] |
| rs61211901 | 0.98[ASN][1000 genomes] |
| rs73014357 | 0.98[ASN][1000 genomes] |
| rs73014358 | 0.98[ASN][1000 genomes] |
| rs73014361 | 0.98[ASN][1000 genomes] |
| rs73014362 | 0.98[ASN][1000 genomes] |
| rs73014363 | 0.98[ASN][1000 genomes] |
| rs7530395 | 1.00[ASN][1000 genomes] |
| rs7541816 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829614 | chr1:160465291-160595000 | Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv872491 | chr1:160470258-160580549 | Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv831703 | chr1:160496124-160643024 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:160505000-160505800 | ZNF genes & repeats | Dnd41 | blood |
| 2 | chr1:160505200-160505400 | ZNF genes & repeats | Primary Natural Killer cells fromperipheralblood | blood |
