Variant report
| Variant | rs12035059 |
|---|---|
| Chromosome Location | chr1:160504099-160504100 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:160502002..160504968-chr1:160508623..160511238,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234425 | TF binding region |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10494344 | 0.95[ASN][1000 genomes] |
| rs11265416 | 0.95[ASN][1000 genomes] |
| rs11265423 | 0.98[ASN][1000 genomes] |
| rs12021693 | 0.95[ASN][1000 genomes] |
| rs12023225 | 0.95[ASN][1000 genomes] |
| rs12025833 | 0.95[ASN][1000 genomes] |
| rs12025852 | 0.95[ASN][1000 genomes] |
| rs12025853 | 0.95[ASN][1000 genomes] |
| rs12025909 | 0.95[ASN][1000 genomes] |
| rs12026076 | 0.95[ASN][1000 genomes] |
| rs12028187 | 0.95[ASN][1000 genomes] |
| rs12029117 | 0.98[ASN][1000 genomes] |
| rs12030215 | 0.95[ASN][1000 genomes] |
| rs12030424 | 0.95[ASN][1000 genomes] |
| rs12031321 | 0.98[ASN][1000 genomes] |
| rs12031547 | 0.95[ASN][1000 genomes] |
| rs12031944 | 0.98[ASN][1000 genomes] |
| rs12032998 | 0.98[ASN][1000 genomes] |
| rs12033791 | 0.98[ASN][1000 genomes] |
| rs12034408 | 0.98[ASN][1000 genomes] |
| rs12034811 | 0.95[ASN][1000 genomes] |
| rs12036359 | 0.98[ASN][1000 genomes] |
| rs12036361 | 0.98[ASN][1000 genomes] |
| rs12041528 | 0.98[ASN][1000 genomes] |
| rs12046037 | 0.81[ASN][1000 genomes] |
| rs12047475 | 0.95[ASN][1000 genomes] |
| rs12048891 | 0.95[ASN][1000 genomes] |
| rs12067121 | 0.95[ASN][1000 genomes] |
| rs3953020 | 0.95[ASN][1000 genomes] |
| rs57700636 | 0.98[ASN][1000 genomes] |
| rs59461961 | 0.95[ASN][1000 genomes] |
| rs59620977 | 0.95[ASN][1000 genomes] |
| rs59621006 | 0.95[ASN][1000 genomes] |
| rs59838583 | 0.98[ASN][1000 genomes] |
| rs61211901 | 0.95[ASN][1000 genomes] |
| rs73014357 | 0.95[ASN][1000 genomes] |
| rs73014358 | 0.95[ASN][1000 genomes] |
| rs73014361 | 0.95[ASN][1000 genomes] |
| rs73014362 | 0.95[ASN][1000 genomes] |
| rs73014363 | 0.95[ASN][1000 genomes] |
| rs7530395 | 0.98[ASN][1000 genomes] |
| rs7541816 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829614 | chr1:160465291-160595000 | Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv872491 | chr1:160470258-160580549 | Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv831703 | chr1:160496124-160643024 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:160503800-160505200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
