Variant report
| Variant | rs16832362 |
|---|---|
| Chromosome Location | chr3:161160225-161160226 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:10 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161087867..161091778-chr3:161159434..161163634,9 | MCF-7 | breast: | |
| 2 | chr3:161088423..161092396-chr3:161159740..161164169,5 | MCF-7 | breast: | |
| 3 | chr3:161156686..161159483-chr3:161160092..161163012,3 | MCF-7 | breast: | |
| 4 | chr3:161160203..161162184-chr3:161166453..161168231,2 | MCF-7 | breast: | |
| 5 | chr3:161159586..161162271-chr3:161162430..161165084,3 | MCF-7 | breast: | |
| 6 | chr3:161157860..161160581-chr3:161168208..161171597,3 | MCF-7 | breast: | |
| 7 | chr3:161137315..161139728-chr3:161159914..161161772,2 | MCF-7 | breast: | |
| 8 | chr3:161119895..161121991-chr3:161159318..161161280,2 | MCF-7 | breast: | |
| 9 | chr3:161139196..161140956-chr3:161159538..161162067,2 | MCF-7 | breast: | |
| 10 | chr3:161149348..161152131-chr3:161159932..161161916,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196542 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs12487559 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12630808 | 0.94[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12636206 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12636640 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16832441 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62278271 | 0.92[ASN][1000 genomes] |
| rs6785300 | 0.92[ASN][1000 genomes] |
| rs7620513 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| 3 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| 4 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
