Variant report
| Variant | rs16832441 |
|---|---|
| Chromosome Location | chr3:161193325-161193326 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161186330..161188713-chr3:161191015..161194014,3 | MCF-7 | breast: | |
| 2 | chr16:13221858..13222514-chr3:161192650..161193500,2 | MCF-7 | breast: | |
| 3 | chr3:161161602..161163726-chr3:161192340..161193989,2 | MCF-7 | breast: | |
| 4 | chr3:161192914..161194705-chr3:161200640..161203069,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10513567 | 0.82[AMR][1000 genomes] |
| rs10513568 | 0.82[AMR][1000 genomes] |
| rs12485788 | 0.82[AMR][1000 genomes] |
| rs12487559 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12489359 | 0.82[AMR][1000 genomes] |
| rs12492702 | 0.82[AMR][1000 genomes] |
| rs12630808 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12636206 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12636640 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16832362 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16832649 | 0.82[AMR][1000 genomes] |
| rs16832710 | 0.82[AMR][1000 genomes] |
| rs16832715 | 0.82[AMR][1000 genomes] |
| rs16832734 | 0.82[AMR][1000 genomes] |
| rs2048040 | 0.82[AMR][1000 genomes] |
| rs59873230 | 0.82[AMR][1000 genomes] |
| rs62278271 | 0.95[ASN][1000 genomes] |
| rs6785300 | 0.95[ASN][1000 genomes] |
| rs7620513 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs882747 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| 3 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| 4 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv520499 | chr3:161193325-161195729 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161192400-161194600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
