Variant report

Variant	rs16832734
Chromosome Location	chr3:161275764-161275765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160991137..160993138-chr3:161275406..161276943,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12485788	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12489359	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493665	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12629040	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12630808	0.81[MEX][hapmap]
rs12636206	0.82[AMR][1000 genomes]
rs1568022	0.88[EUR][1000 genomes]
rs16832441	0.82[AMR][1000 genomes]
rs16832649	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16832710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832715	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833034	0.88[EUR][1000 genomes]
rs16833083	0.83[EUR][1000 genomes]
rs16847278	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2048040	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2138319	0.90[EUR][1000 genomes]
rs59226458	0.90[EUR][1000 genomes]
rs59873230	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6780489	0.83[EUR][1000 genomes]
rs882747	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161269200-161276800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:161270200-161275800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:161271400-161276000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:161272200-161276800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:161272800-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:161274600-161275800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:161274600-161276400	Enhancers	Fetal Stomach	stomach
8	chr3:161275000-161275800	Enhancers	Brain Germinal Matrix	brain
9	chr3:161275000-161275800	Weak transcription	Fetal Heart	heart
10	chr3:161275200-161277800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:161275400-161276000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:161275400-161276400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:161275600-161276400	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:161275600-161276600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:161275600-161276600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:161275600-161276600	Flanking Active TSS	Dnd41	blood

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