Variant report

Variant	rs16832369
Chromosome Location	chr3:161162831-161162832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161136644..161139076-chr3:161160623..161163367,2	MCF-7	breast:
2	chr3:161124593..161126837-chr3:161161985..161163633,2	MCF-7	breast:
3	chr3:161159586..161162271-chr3:161162430..161165084,3	MCF-7	breast:
4	chr3:161087867..161091778-chr3:161159434..161163634,9	MCF-7	breast:
5	chr3:161153934..161156092-chr3:161162530..161165225,2	MCF-7	breast:
6	chr3:161161602..161163726-chr3:161192340..161193989,2	MCF-7	breast:
7	chr3:161088423..161092396-chr3:161159740..161164169,5	MCF-7	breast:
8	chr3:161156686..161159483-chr3:161160092..161163012,3	MCF-7	breast:
9	chr3:161137896..161142184-chr3:161162436..161166379,4	MCF-7	breast:
10	chr3:161161864..161163648-chr3:161163998..161165965,2	MCF-7	breast:
11	chr3:161145758..161147913-chr3:161160739..161163339,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10513565	1.00[ASW][hapmap];0.83[LWK][hapmap];0.89[YRI][hapmap]
rs12487002	1.00[YRI][hapmap]
rs16832526	0.82[AFR][1000 genomes]
rs61049563	1.00[AMR][1000 genomes]
rs6777563	1.00[AMR][1000 genomes]
rs6778346	0.82[AFR][1000 genomes]
rs6785379	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs6787829	0.85[AFR][1000 genomes]
rs73875626	0.82[AFR][1000 genomes]
rs73878320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73878332	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161161200-161163200	Enhancers	HepG2	liver
2	chr3:161162600-161163600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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