Variant report

Variant	rs6777563
Chromosome Location	chr3:161273108-161273109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12487002	0.88[YRI][hapmap]
rs16832369	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16833047	1.00[AMR][1000 genomes]
rs16833301	1.00[AMR][1000 genomes]
rs61049563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802356	1.00[AMR][1000 genomes]
rs73877447	1.00[AMR][1000 genomes]
rs73877453	1.00[AMR][1000 genomes]
rs73877474	1.00[AMR][1000 genomes]
rs73878320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161266400-161274200	Weak transcription	Dnd41	blood
2	chr3:161269200-161276800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:161270200-161275800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161271200-161275000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:161271400-161274600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:161271400-161275400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:161271400-161276000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:161272200-161276800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:161272400-161273600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:161272800-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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