Variant report

Variant	rs6802356
Chromosome Location	chr3:161391399-161391400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16833047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833301	1.00[AMR][1000 genomes]
rs61049563	1.00[AMR][1000 genomes]
rs6777563	1.00[AMR][1000 genomes]
rs73877447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877453	1.00[AMR][1000 genomes]
rs73877474	1.00[AMR][1000 genomes]
rs73877480	1.00[AMR][1000 genomes]
rs983326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161379000-161391600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:161380000-161393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:161390200-161391400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:161390200-161393200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:161390200-161393400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:161390200-161393600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:161390200-161394000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:161390400-161393200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:161390400-161394200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:161390600-161391800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:161390600-161392400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:161390600-161392400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:161390600-161393800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:161390800-161393000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:161390800-161393200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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