Variant report

Variant	rs16832793
Chromosome Location	chr1:161278207-161278208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:161278145-161278230	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161150561..161152446-chr1:161277325..161279650,2	K562	blood:
2	chr1:161192625..161198260-chr1:161274899..161278564,8	K562	blood:

Variant related genes	Relation type
MPZ	TF binding region
ENSG00000158874	Chromatin interaction
ENSG00000263548	Chromatin interaction
ENSG00000158882	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12239719	1.00[JPT][hapmap]
rs16832786	1.00[JPT][hapmap]
rs16832808	1.00[AFR][1000 genomes]
rs16832810	1.00[AFR][1000 genomes]
rs4345822	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161276000-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:161276000-161283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:161276200-161278400	Enhancers	NHLF	lung
4	chr1:161276200-161278800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:161276200-161278800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:161276200-161283200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:161276200-161283600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:161276400-161278400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:161276400-161278400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:161276400-161278400	Enhancers	HMEC	breast
11	chr1:161276400-161278600	Enhancers	Osteobl	bone
12	chr1:161276400-161278800	Enhancers	Brain Hippocampus Middle	brain
13	chr1:161276400-161279000	Enhancers	NHDF-Ad	bronchial
14	chr1:161276400-161279600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:161276400-161282200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:161276400-161283400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:161276400-161283400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:161276400-161283400	Weak transcription	Liver	Liver
19	chr1:161276400-161283600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:161276600-161281200	Weak transcription	Fetal Kidney	kidney
21	chr1:161276600-161282800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:161276600-161283400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:161276600-161283400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:161276600-161283400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr1:161276600-161283400	Weak transcription	Right Atrium	heart
26	chr1:161276600-161283600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:161276800-161278400	Enhancers	GM12878-XiMat	blood
28	chr1:161276800-161283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:161276800-161283400	Weak transcription	Brain Angular Gyrus	brain
30	chr1:161276800-161283400	Weak transcription	Brain Anterior Caudate	brain
31	chr1:161277000-161278800	Enhancers	HSMMtube	muscle
32	chr1:161277000-161281000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:161277000-161283600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:161277200-161278600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:161277200-161278800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:161277200-161280200	Weak transcription	NHEK	skin
37	chr1:161277200-161283000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:161277200-161283400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr1:161277200-161283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:161277200-161283400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr1:161277200-161283400	Weak transcription	Esophagus	oesophagus
42	chr1:161277200-161283400	Weak transcription	Pancreas	Pancrea
43	chr1:161277200-161283400	Weak transcription	Spleen	Spleen
44	chr1:161277200-161283600	Weak transcription	Left Ventricle	heart
45	chr1:161277400-161278400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:161277400-161278400	Enhancers	Dnd41	blood
47	chr1:161277400-161278400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr1:161277400-161278600	Enhancers	Hela-S3	cervix
49	chr1:161277400-161278600	Enhancers	HSMM	muscle
50	chr1:161277400-161281600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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