Variant report

Variant	rs16832810
Chromosome Location	chr1:161286417-161286418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161282416..161286426-chr1:161334773..161339073,4	K562	blood:
2	chr1:161199531..161202492-chr1:161284908..161286481,2	K562	blood:
3	chr1:161284338..161286990-chr1:161287610..161289670,3	MCF-7	breast:
4	chr1:161194292..161205045-chr1:161279588..161288493,17	K562	blood:
5	chr1:161284112..161286514-chr1:161369211..161371355,2	K562	blood:
6	chr1:161281081..161283792-chr1:161284991..161286522,2	MCF-7	breast:
7	chr1:161194451..161198420-chr1:161282525..161287303,8	K562	blood:

Variant related genes	Relation type
ENSG00000158882	Chromatin interaction
ENSG00000143257	Chromatin interaction
ENSG00000206921	Chromatin interaction
ENSG00000188931	Chromatin interaction
ENSG00000263548	Chromatin interaction
ENSG00000235477	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16832793	1.00[AFR][1000 genomes]
rs16832808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4308999	0.90[ASN][1000 genomes]
rs4345822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4596919	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4986941	1.00[AMR][1000 genomes]
rs61734585	0.80[ASN][1000 genomes]
rs7413615	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161284800-161288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:161284800-161289200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:161284800-161293600	Weak transcription	Small Intestine	intestine
4	chr1:161284800-161295000	Weak transcription	Spleen	Spleen
5	chr1:161284800-161300400	Weak transcription	Aorta	Aorta
6	chr1:161285000-161286600	Flanking Active TSS	K562	blood
7	chr1:161285000-161288200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:161285000-161288200	Weak transcription	Pancreas	Pancrea
9	chr1:161285000-161288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:161285000-161288600	Weak transcription	Placenta	Placenta
11	chr1:161285000-161288600	Weak transcription	Ovary	ovary
12	chr1:161285000-161293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:161285000-161295600	Weak transcription	Gastric	stomach
14	chr1:161285000-161296600	Weak transcription	Colonic Mucosa	Colon
15	chr1:161285000-161298400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:161285000-161301800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:161285200-161288200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:161285200-161289200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:161285200-161289400	Weak transcription	Thymus	Thymus
20	chr1:161285200-161293400	Weak transcription	Fetal Brain Female	brain
21	chr1:161285200-161293800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:161285200-161293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:161285200-161293800	Weak transcription	Adipose Nuclei	Adipose
24	chr1:161285200-161293800	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:161285200-161293800	Weak transcription	Fetal Thymus	thymus
26	chr1:161285200-161295400	Weak transcription	Primary B cells from cord blood	blood
27	chr1:161285200-161295400	Weak transcription	Brain Substantia Nigra	brain
28	chr1:161285200-161295400	Weak transcription	Fetal Kidney	kidney
29	chr1:161285200-161295400	Weak transcription	Right Ventricle	heart
30	chr1:161285200-161299200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr1:161285200-161321400	Weak transcription	Stomach Mucosa	stomach
32	chr1:161285400-161286600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:161285400-161286800	Enhancers	Fetal Heart	heart
34	chr1:161285400-161287200	Enhancers	Liver	Liver
35	chr1:161285400-161288000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:161285400-161288200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:161285400-161288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:161285400-161288400	Weak transcription	Fetal Stomach	stomach
39	chr1:161285400-161288600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:161285400-161289200	Weak transcription	Fetal Intestine Small	intestine
41	chr1:161285400-161289400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:161285400-161289600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr1:161285400-161293200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr1:161285400-161293200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr1:161285400-161293200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:161285400-161293400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:161285400-161293800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:161285400-161293800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:161285400-161293800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:161285400-161293800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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