Variant report

Variant	rs7413615
Chromosome Location	chr1:161374663-161374664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161371806..161374700-chr1:161382431..161384803,2	MCF-7	breast:
2	chr1:161367523..161369303-chr1:161373719..161375547,2	MCF-7	breast:
3	chr1:161373435..161375369-chr1:161381940..161384249,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16832808	0.80[ASN][1000 genomes]
rs16832810	0.80[ASN][1000 genomes]
rs4308999	0.90[ASN][1000 genomes]
rs4345822	0.90[ASN][1000 genomes]
rs4596919	0.90[ASN][1000 genomes]
rs61734585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv872493	chr1:161339060-161413794	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1005812	chr1:161343951-161548101	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv535182	chr1:161343951-161548101	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
9	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
10	nsv998957	chr1:161353351-161398414	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
11	nsv433020	chr1:161355634-161673682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
12	esv2754329	chr1:161355728-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
13	nsv433031	chr1:161355728-161673682	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
14	nsv433042	chr1:161372038-161673682	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
15	nsv946461	chr1:161372505-161384947	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv3350498	chr1:161374323-161380643	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161370400-161375400	Weak transcription	Ovary	ovary
2	chr1:161370400-161379200	Weak transcription	Stomach Mucosa	stomach
3	chr1:161370400-161380000	Weak transcription	Gastric	stomach
4	chr1:161370600-161375200	Weak transcription	Hela-S3	cervix
5	chr1:161370600-161378600	Weak transcription	Fetal Heart	heart
6	chr1:161370600-161381800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:161370800-161374800	Weak transcription	Fetal Brain Male	brain
8	chr1:161370800-161379200	Weak transcription	Colonic Mucosa	Colon
9	chr1:161371000-161378800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:161371000-161378800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:161371000-161379000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:161371000-161379000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:161371000-161379000	Weak transcription	Right Atrium	heart
14	chr1:161371000-161379400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:161371000-161381400	Weak transcription	Esophagus	oesophagus
16	chr1:161371000-161387800	Weak transcription	Spleen	Spleen
17	chr1:161371200-161378800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:161371200-161379000	Weak transcription	Psoas Muscle	Psoas
19	chr1:161371400-161378400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:161371400-161379000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:161371600-161379000	Weak transcription	Right Ventricle	heart
22	chr1:161372200-161379800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:161372400-161375400	Weak transcription	Pancreas	Pancrea
24	chr1:161372800-161377400	Weak transcription	Fetal Intestine Large	intestine
25	chr1:161374000-161374800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:161374000-161377600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:161374000-161379000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:161374200-161378800	Weak transcription	Left Ventricle	heart
29	chr1:161374200-161380000	Weak transcription	Small Intestine	intestine
30	chr1:161374400-161374800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:161374400-161374800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:161374400-161374800	Enhancers	Fetal Lung	lung
33	chr1:161374400-161375400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:161374600-161377200	Weak transcription	K562	blood
35	chr1:161374600-161378600	Weak transcription	HepG2	liver

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