Variant report

Variant	rs16832845
Chromosome Location	chr1:161313287-161313288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16832814	0.94[AFR][1000 genomes]
rs4590682	1.00[AFR][1000 genomes]
rs56718047	0.88[AFR][1000 genomes]
rs58697685	0.82[AFR][1000 genomes]
rs59325217	0.85[AFR][1000 genomes]
rs60821801	0.82[AFR][1000 genomes]
rs60878329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60928728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61157192	1.00[AFR][1000 genomes]
rs61271734	0.94[AFR][1000 genomes]
rs61458643	0.85[AFR][1000 genomes]
rs61602668	0.85[AFR][1000 genomes]
rs61734586	0.82[AFR][1000 genomes]
rs73024038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024061	1.00[AFR][1000 genomes]
rs73024097	0.82[AFR][1000 genomes]
rs73024098	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161285200-161321400	Weak transcription	Stomach Mucosa	stomach
2	chr1:161285400-161321400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:161286800-161337400	Weak transcription	Fetal Heart	heart
4	chr1:161287000-161337400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:161289600-161317200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:161293200-161315200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:161293200-161317000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:161293200-161317400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:161293400-161315000	Strong transcription	Fetal Intestine Large	intestine
10	chr1:161293800-161313400	Strong transcription	Fetal Muscle Leg	muscle
11	chr1:161293800-161313400	Strong transcription	Placenta	Placenta
12	chr1:161293800-161313400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr1:161293800-161313600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:161293800-161313600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:161293800-161317800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:161293800-161317800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr1:161294000-161317000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:161294000-161317200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:161294200-161318200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:161294200-161337400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:161294200-161338200	Weak transcription	Small Intestine	intestine
22	chr1:161295000-161317000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr1:161295000-161317800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:161300200-161317200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:161300400-161317400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:161300600-161317200	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:161302000-161314200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:161304200-161314400	Weak transcription	A549	lung
29	chr1:161304200-161321400	Weak transcription	Gastric	stomach
30	chr1:161304600-161326600	Weak transcription	Aorta	Aorta
31	chr1:161304600-161342600	Weak transcription	Esophagus	oesophagus
32	chr1:161304800-161329000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:161304800-161329400	Weak transcription	Fetal Kidney	kidney
34	chr1:161304800-161334600	Weak transcription	Fetal Brain Male	brain
35	chr1:161305000-161337800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr1:161305400-161337400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:161305800-161326400	Weak transcription	NHLF	lung
38	chr1:161306000-161317200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:161306000-161317200	Strong transcription	Liver	Liver
40	chr1:161306000-161317400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:161306600-161316400	Weak transcription	Hela-S3	cervix
42	chr1:161306800-161317200	Strong transcription	Adipose Nuclei	Adipose
43	chr1:161307400-161337600	Weak transcription	Psoas Muscle	Psoas
44	chr1:161307800-161333000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:161308400-161313400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:161308400-161313800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:161308600-161313400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:161308600-161313400	Strong transcription	Brain Anterior Caudate	brain
49	chr1:161308600-161313400	Strong transcription	Thymus	Thymus
50	chr1:161308600-161317800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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