Variant report

Variant	rs73024038
Chromosome Location	chr1:161300526-161300527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161288348..161289973-chr1:161298719..161301055,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16832814	1.00[AFR][1000 genomes]
rs16832845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4590682	0.94[AFR][1000 genomes]
rs56718047	0.94[AFR][1000 genomes]
rs59325217	0.85[AFR][1000 genomes]
rs60821801	0.82[AFR][1000 genomes]
rs60878329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60928728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61157192	0.94[AFR][1000 genomes]
rs61271734	0.88[AFR][1000 genomes]
rs61458643	0.85[AFR][1000 genomes]
rs61602668	0.91[AFR][1000 genomes]
rs73024061	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv3417674	chr1:161298229-161310433	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161285000-161301800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:161285200-161321400	Weak transcription	Stomach Mucosa	stomach
3	chr1:161285400-161302000	Weak transcription	Fetal Brain Male	brain
4	chr1:161285400-161303400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:161285400-161303600	Weak transcription	NHLF	lung
6	chr1:161285400-161310200	Weak transcription	HUVEC	blood vessel
7	chr1:161285400-161321400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:161285600-161302600	Weak transcription	Esophagus	oesophagus
9	chr1:161286800-161337400	Weak transcription	Fetal Heart	heart
10	chr1:161287000-161337400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:161289600-161317200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:161293200-161304600	Strong transcription	Fetal Intestine Small	intestine
13	chr1:161293200-161306600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:161293200-161307800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr1:161293200-161315200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:161293200-161317000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:161293200-161317400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:161293400-161302000	Strong transcription	Thymus	Thymus
19	chr1:161293400-161307400	Strong transcription	Fetal Stomach	stomach
20	chr1:161293400-161307800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:161293400-161315000	Strong transcription	Fetal Intestine Large	intestine
22	chr1:161293600-161304400	Strong transcription	Lung	lung
23	chr1:161293600-161307400	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:161293800-161300800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:161293800-161300800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:161293800-161300800	Strong transcription	HepG2	liver
27	chr1:161293800-161302000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:161293800-161304600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:161293800-161304600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:161293800-161304600	Strong transcription	Ovary	ovary
31	chr1:161293800-161304800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr1:161293800-161304800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:161293800-161305000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:161293800-161305000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr1:161293800-161305800	Strong transcription	Stomach Smooth Muscle	stomach
36	chr1:161293800-161306000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:161293800-161306000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:161293800-161306000	Strong transcription	Adipose Nuclei	Adipose
39	chr1:161293800-161306600	Strong transcription	Fetal Lung	lung
40	chr1:161293800-161306800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr1:161293800-161307200	Strong transcription	Left Ventricle	heart
42	chr1:161293800-161307200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:161293800-161307600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:161293800-161307600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr1:161293800-161307600	Strong transcription	Fetal Thymus	thymus
46	chr1:161293800-161307800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:161293800-161308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:161293800-161309600	Strong transcription	Dnd41	blood
49	chr1:161293800-161313400	Strong transcription	Fetal Muscle Leg	muscle
50	chr1:161293800-161313400	Strong transcription	Placenta	Placenta

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