Variant report

Variant	rs16834580
Chromosome Location	chr1:150137882-150137883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149854392..149861957-chr1:150131544..150142194,21	K562	blood:
2	chr1:150135482..150138288-chr1:150152643..150155510,2	MCF-7	breast:
3	chr1:149852970..149861957-chr1:150133189..150142962,24	K562	blood:
4	chr1:150135426..150138893-chr1:150159177..150161472,3	K562	blood:
5	chr1:150136368..150139381-chr1:150151940..150156173,4	K562	blood:
6	chr1:150044965..150047387-chr1:150136766..150139842,3	MCF-7	breast:
7	chr1:150055524..150057125-chr1:150135664..150138372,2	MCF-7	breast:
8	chr1:150137796..150140038-chr1:150140042..150141788,3	MCF-7	breast:
9	chr1:150134055..150139099-chr1:150139132..150143915,8	K562	blood:
10	chr1:150044647..150045690-chr1:150137879..150138875,5	K562	blood:
11	chr1:150037224..150041771-chr1:150132970..150138750,9	MCF-7	breast:
12	chr1:150035483..150047454-chr1:150129931..150138567,28	MCF-7	breast:
13	chr1:149854077..149861961-chr1:150131511..150145996,30	MCF-7	breast:
14	chr1:149856989..149863100-chr1:150133834..150145484,23	MCF-7	breast:
15	chr1:149904854..149906569-chr1:150136905..150138427,2	MCF-7	breast:
16	chr1:150037572..150039260-chr1:150137340..150140084,3	K562	blood:
17	chr1:149933703..149935024-chr1:150137435..150138842,5	K562	blood:
18	chr1:150133612..150139451-chr1:150205752..150208601,7	K562	blood:
19	chr1:150040895..150044232-chr1:150137014..150139861,3	K562	blood:
20	chr1:150136389..150137930-chr1:150144546..150147422,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136631	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000143401	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157434	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10158112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10437053	1.00[AMR][1000 genomes]
rs13373954	1.00[AMR][1000 genomes]
rs13374784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833299	1.00[AMR][1000 genomes]
rs7354929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535152	chr1:150120726-150143089	Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150131800-150138600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr1:150132400-150138200	Weak transcription	Gastric	stomach
3	chr1:150132400-150141200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:150132800-150138400	Enhancers	Fetal Heart	heart
5	chr1:150133600-150138600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:150134600-150138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:150135200-150145200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:150135400-150138400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:150135400-150138400	Enhancers	Colon Smooth Muscle	Colon
10	chr1:150135400-150138600	Enhancers	Fetal Thymus	thymus
11	chr1:150135400-150141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:150135600-150138200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr1:150135600-150138200	Enhancers	Fetal Muscle Leg	muscle
14	chr1:150135600-150138600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:150135800-150138400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:150135800-150138400	Enhancers	Stomach Mucosa	stomach
17	chr1:150135800-150138600	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:150135800-150138600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:150135800-150138600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:150135800-150139400	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:150136000-150138400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:150136000-150138400	Enhancers	Adipose Nuclei	Adipose
23	chr1:150136000-150138400	Enhancers	Rectal Smooth Muscle	rectum
24	chr1:150136000-150138400	Enhancers	Stomach Smooth Muscle	stomach
25	chr1:150136000-150138600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:150136000-150139200	Enhancers	Primary B cells from cord blood	blood
27	chr1:150136000-150141200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:150136200-150138000	Weak transcription	Small Intestine	intestine
29	chr1:150136200-150138000	Weak transcription	HSMMtube	muscle
30	chr1:150136200-150138000	Enhancers	K562	blood
31	chr1:150136200-150141200	Weak transcription	Fetal Intestine Large	intestine
32	chr1:150136400-150138000	Weak transcription	Left Ventricle	heart
33	chr1:150136400-150138000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:150136400-150141600	Weak transcription	Placenta	Placenta
35	chr1:150136400-150145600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:150136400-150148800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:150136600-150138000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:150136600-150138000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:150136600-150138000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:150136600-150138000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:150136600-150138000	Weak transcription	Fetal Intestine Small	intestine
42	chr1:150136600-150138000	Weak transcription	Right Ventricle	heart
43	chr1:150136600-150138000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:150136600-150138400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:150136600-150138600	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr1:150136600-150141000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:150136600-150141200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:150136600-150141600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:150136600-150145200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:150136800-150138000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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