Variant report

Variant	rs7354929
Chromosome Location	chr1:150159004-150159005
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150135480..150137843-chr1:150155550..150159423,3	MCF-7	breast:
2	chr1:150158453..150162673-chr1:150163333..150168341,4	K562	blood:
3	chr1:150119841..150122782-chr1:150157323..150159166,2	MCF-7	breast:
4	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
5	chr1:150141416..150143115-chr1:150156273..150159432,3	K562	blood:
6	chr1:150022553..150024320-chr1:150157694..150159816,2	K562	blood:
7	chr1:150153848..150155568-chr1:150157688..150159819,2	K562	blood:
8	chr1:150038925..150041395-chr1:150157701..150159841,3	MCF-7	breast:
9	chr1:149853460..149855808-chr1:150158235..150161131,2	K562	blood:
10	chr1:149855497..149863444-chr1:150156597..150162643,11	K562	blood:
11	chr1:149909021..149910890-chr1:150157727..150159306,2	MCF-7	breast:
12	chr1:149858307..149862337-chr1:150158669..150163004,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000023902	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000184678	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157434	1.00[AMR][1000 genomes]
rs10158112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10437053	1.00[AMR][1000 genomes]
rs13373954	1.00[AMR][1000 genomes]
rs13374784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833299	1.00[AMR][1000 genomes]
rs16834580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
2	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
3	chr1:150151000-150159200	Weak transcription	Adipose Nuclei	Adipose
4	chr1:150154800-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:150156000-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:150156400-150159200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:150156600-150159200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:150156600-150159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:150156800-150159200	Weak transcription	HMEC	breast
10	chr1:150157200-150159800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:150158200-150159200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:150158200-150160000	Enhancers	HSMM	muscle
13	chr1:150158200-150160000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr1:150158400-150159600	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:150158400-150159600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:150158400-150160000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr1:150158600-150159200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:150158600-150159200	Enhancers	NH-A	brain
19	chr1:150158600-150159400	Flanking Active TSS	Placenta	Placenta
20	chr1:150158600-150159600	Enhancers	NHEK	skin
21	chr1:150158600-150160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:150158800-150159200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:150158800-150159200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr1:150158800-150159200	Active TSS	Brain Hippocampus Middle	brain
25	chr1:150158800-150159200	Enhancers	Osteobl	bone
26	chr1:150158800-150159600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:150158800-150159600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:150158800-150159600	Enhancers	NHLF	lung
29	chr1:150158800-150160000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:150158800-150160200	Active TSS	Brain Angular Gyrus	brain
31	chr1:150158800-150160200	Enhancers	Brain Cingulate Gyrus	brain
32	chr1:150158800-150160200	Enhancers	NHDF-Ad	bronchial
33	chr1:150158800-150160400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:150158800-150160600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:150159000-150159200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:150159000-150159200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr1:150159000-150159200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:150159000-150159200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr1:150159000-150159200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:150159000-150159200	Active TSS	Hela-S3	cervix
41	chr1:150159000-150159400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr1:150159000-150159400	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr1:150159000-150159400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr1:150159000-150159400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:150159000-150159400	Flanking Active TSS	Liver	Liver
46	chr1:150159000-150159400	Flanking Active TSS	HepG2	liver
47	chr1:150159000-150159400	Flanking Active TSS	K562	blood
48	chr1:150159000-150159600	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr1:150159000-150159600	Flanking Active TSS	A549	lung
50	chr1:150159000-150159800	Active TSS	Stomach Smooth Muscle	stomach

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