Variant report

Variant	rs16835872
Chromosome Location	chr1:150275347-150275348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150273542..150277317-chr1:150288734..150292129,4	MCF-7	breast:
2	chr1:150240909..150242553-chr1:150274795..150276928,2	MCF-7	breast:
3	chr1:150272877..150274381-chr1:150274670..150277501,2	K562	blood:
4	chr1:150253424..150256570-chr1:150274213..150277391,3	MCF-7	breast:
5	chr1:150274604..150277468-chr1:150284678..150287144,3	K562	blood:
6	chr1:150274394..150277306-chr1:150282365..150283997,2	K562	blood:
7	chr1:150273843..150276533-chr1:150292946..150294730,3	MCF-7	breast:
8	chr1:150274556..150276296-chr1:150279435..150281772,2	K562	blood:
9	chr1:150274327..150277106-chr1:150277953..150280795,3	MCF-7	breast:
10	chr1:150273449..150279043-chr1:150279801..150282340,7	MCF-7	breast:
11	chr1:150269403..150271858-chr1:150275044..150277838,2	K562	blood:
12	chr1:150274446..150278949-chr1:150292354..150296326,6	MCF-7	breast:
13	chr1:150264435..150268272-chr1:150270315..150275864,5	K562	blood:
14	chr1:150233016..150235237-chr1:150272943..150275487,2	K562	blood:
15	chr1:150270315..150271818-chr1:150274900..150276885,2	MCF-7	breast:
16	chr1:150272468..150277468-chr1:150279289..150286428,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000159208	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000117360	Chromatin interaction
ENSG00000238526	Chromatin interaction
ENSG00000187145	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10157434	0.83[LWK][hapmap];1.00[MKK][hapmap]
rs16835698	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16835714	1.00[YRI][hapmap]
rs16835995	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836615	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836849	1.00[ASW][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836939	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16837013	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16837048	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16837392	1.00[AMR][1000 genomes]
rs56871849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59540922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61008863	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv1011223	chr1:150229205-150279380	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150267000-150280000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:150267000-150280000	Weak transcription	Small Intestine	intestine
3	chr1:150267000-150284000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:150267000-150293200	Weak transcription	Stomach Mucosa	stomach
5	chr1:150267200-150275600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:150267200-150276000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:150267200-150280000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:150267200-150280000	Weak transcription	Esophagus	oesophagus
9	chr1:150267200-150286400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:150267600-150275400	Strong transcription	Fetal Stomach	stomach
11	chr1:150267600-150276400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr1:150267600-150277800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:150267800-150276400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:150267800-150277000	Strong transcription	Adipose Nuclei	Adipose
15	chr1:150267800-150280800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:150267800-150281400	Strong transcription	Liver	Liver
17	chr1:150267800-150282000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr1:150268000-150281000	Strong transcription	Fetal Muscle Leg	muscle
19	chr1:150268000-150281400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr1:150268000-150282600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:150268000-150293200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:150268200-150275400	Strong transcription	Fetal Intestine Small	intestine
23	chr1:150268200-150278800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:150268200-150279800	Weak transcription	Pancreas	Pancrea
25	chr1:150268200-150282600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:150268200-150282600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:150268200-150282800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:150268200-150282800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:150268200-150282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:150268400-150276800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:150268600-150281000	Weak transcription	Fetal Brain Male	brain
32	chr1:150269000-150275600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:150269000-150281400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:150269000-150282800	Strong transcription	Fetal Thymus	thymus
35	chr1:150269200-150277000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr1:150269200-150277600	Weak transcription	NHDF-Ad	bronchial
37	chr1:150269400-150282800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:150270200-150276400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr1:150270200-150276400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:150270600-150275600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:150270600-150277800	Strong transcription	Fetal Intestine Large	intestine
42	chr1:150271600-150284000	Weak transcription	Colonic Mucosa	Colon
43	chr1:150272200-150276000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr1:150272200-150276000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr1:150272200-150276400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr1:150272200-150276400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr1:150272200-150277000	Strong transcription	Osteobl	bone
48	chr1:150272200-150277200	Strong transcription	A549	lung
49	chr1:150272400-150276400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:150272400-150276400	Strong transcription	Muscle Satellite Cultured Cells	--

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