Variant report

Variant	rs16837013
Chromosome Location	chr1:150427386-150427387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150420960..150423785-chr1:150427257..150428939,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11205386	0.88[YRI][hapmap]
rs16835698	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16835714	1.00[YRI][hapmap]
rs16835872	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16835995	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16836615	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836849	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836939	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16837048	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16837392	1.00[AMR][1000 genomes]
rs16837434	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs56871849	1.00[AMR][1000 genomes]
rs59540922	1.00[AMR][1000 genomes]
rs61008863	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72696859	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150373200-150442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:150380600-150429800	Weak transcription	Aorta	Aorta
3	chr1:150382000-150432400	Weak transcription	Fetal Brain Male	brain
4	chr1:150383400-150432200	Weak transcription	Right Ventricle	heart
5	chr1:150383400-150443200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:150386800-150429800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:150390000-150429600	Weak transcription	A549	lung
8	chr1:150393400-150429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:150393600-150429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:150393800-150429800	Weak transcription	NHEK	skin
11	chr1:150401400-150448200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:150409800-150437000	Strong transcription	Fetal Thymus	thymus
13	chr1:150410000-150429800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:150410800-150434400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr1:150411000-150429800	Weak transcription	HUVEC	blood vessel
16	chr1:150411200-150446400	Strong transcription	Dnd41	blood
17	chr1:150412000-150443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:150412600-150428200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:150413400-150436000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:150413600-150446200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:150413600-150446400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr1:150413800-150446000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:150414000-150446400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:150414200-150433600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr1:150414200-150434200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:150414200-150440800	Strong transcription	Fetal Intestine Large	intestine
27	chr1:150414400-150442200	Weak transcription	Fetal Heart	heart
28	chr1:150415200-150429800	Weak transcription	NHLF	lung
29	chr1:150415600-150429800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:150417600-150428800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:150417800-150429800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:150418200-150428600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:150418400-150429800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:150419200-150428600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr1:150419200-150429400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr1:150419200-150429800	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:150419200-150430000	Weak transcription	NHDF-Ad	bronchial
38	chr1:150419200-150441000	Weak transcription	HMEC	breast
39	chr1:150419200-150442200	Weak transcription	NH-A	brain
40	chr1:150419200-150443200	Weak transcription	Psoas Muscle	Psoas
41	chr1:150419400-150432400	Weak transcription	HSMMtube	muscle
42	chr1:150419800-150429600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:150419800-150429800	Weak transcription	Gastric	stomach
44	chr1:150419800-150429800	Weak transcription	Pancreas	Pancrea
45	chr1:150419800-150431200	Weak transcription	Esophagus	oesophagus
46	chr1:150419800-150434800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr1:150420000-150429600	Weak transcription	Spleen	Spleen
48	chr1:150420400-150429600	Weak transcription	Brain Anterior Caudate	brain
49	chr1:150420400-150429800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:150420600-150429600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links