Variant report

Variant	rs16836525
Chromosome Location	chr1:154898899-154898900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154897367..154899498-chr1:154907616..154911197,3	MCF-7	breast:
2	chr1:154898235..154901103-chr1:154908518..154910078,2	K562	blood:
3	chr1:154578327..154580689-chr1:154898287..154900817,2	MCF-7	breast:
4	chr1:154898414..154901108-chr1:154965094..154967313,2	MCF-7	breast:
5	chr1:154897126..154900008-chr1:155040809..155042688,2	MCF-7	breast:
6	chr1:154897179..154899202-chr1:154902262..154904996,2	K562	blood:
7	chr1:154893687..154895770-chr1:154896585..154899299,2	K562	blood:
8	chr1:154897327..154899554-chr1:154972284..154973905,2	K562	blood:
9	chr1:154896921..154899506-chr1:154944950..154947369,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270361	Chromatin interaction
ENSG00000173207	Chromatin interaction
ENSG00000163352	Chromatin interaction
ENSG00000163344	Chromatin interaction
ENSG00000160710	Chromatin interaction
ENSG00000160691	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10127993	1.00[AMR][1000 genomes]
rs1061122	1.00[CHB][hapmap]
rs10908443	1.00[CHB][hapmap]
rs11264285	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078687	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1218554	1.00[CHB][hapmap]
rs1218584	1.00[CHB][hapmap]
rs1218585	1.00[CHB][hapmap]
rs1218587	1.00[CHB][hapmap]
rs1218589	1.00[CHB][hapmap]
rs12760148	1.00[CHB][hapmap]
rs2878412	1.00[CHB][hapmap]
rs4492614	1.00[JPT][hapmap]
rs4845396	1.00[CHB][hapmap]
rs4845397	1.00[CHB][hapmap]
rs4845402	1.00[CHB][hapmap]
rs60707099	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682335	1.00[CHB][hapmap]
rs906596	1.00[CHB][hapmap]
rs906597	1.00[CHB][hapmap]
rs954785	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv432942	chr1:154818353-154903047	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv464073	chr1:154837796-154904840	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv547960	chr1:154837796-154904840	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv2977	chr1:154881053-154907613	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154884800-154908400	Weak transcription	Psoas Muscle	Psoas
2	chr1:154886800-154908200	Weak transcription	Fetal Heart	heart
3	chr1:154889800-154900800	Weak transcription	HepG2	liver
4	chr1:154891200-154908600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:154892600-154903600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:154892600-154905400	Strong transcription	Fetal Muscle Leg	muscle
7	chr1:154893200-154902800	Strong transcription	Liver	Liver
8	chr1:154893200-154905600	Strong transcription	Stomach Smooth Muscle	stomach
9	chr1:154893200-154908200	Weak transcription	NH-A	brain
10	chr1:154893400-154901200	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:154893400-154902600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:154893400-154905600	Strong transcription	Fetal Stomach	stomach
13	chr1:154893800-154900600	Weak transcription	Fetal Kidney	kidney
14	chr1:154893800-154903800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:154893800-154904000	Weak transcription	Stomach Mucosa	stomach
16	chr1:154894200-154901800	Strong transcription	Brain Cingulate Gyrus	brain
17	chr1:154894200-154902600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr1:154894200-154905000	Strong transcription	Fetal Brain Female	brain
19	chr1:154894400-154904800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:154894400-154908400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:154894600-154902400	Strong transcription	Gastric	stomach
22	chr1:154894600-154903600	Strong transcription	Fetal Intestine Small	intestine
23	chr1:154894600-154905000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr1:154894800-154899200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:154894800-154899400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:154894800-154899400	Strong transcription	Left Ventricle	heart
27	chr1:154894800-154899400	Strong transcription	Pancreas	Pancrea
28	chr1:154894800-154899400	Strong transcription	Thymus	Thymus
29	chr1:154894800-154901600	Strong transcription	Right Ventricle	heart
30	chr1:154894800-154902400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:154894800-154902400	Strong transcription	Aorta	Aorta
32	chr1:154894800-154902400	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr1:154894800-154902400	Strong transcription	Brain Substantia Nigra	brain
34	chr1:154894800-154902400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr1:154894800-154902600	Strong transcription	Brain Angular Gyrus	brain
36	chr1:154894800-154902600	Strong transcription	Lung	lung
37	chr1:154894800-154902600	Strong transcription	Rectal Smooth Muscle	rectum
38	chr1:154894800-154902600	Strong transcription	Spleen	Spleen
39	chr1:154894800-154903400	Strong transcription	Fetal Intestine Large	intestine
40	chr1:154894800-154904800	Strong transcription	Esophagus	oesophagus
41	chr1:154894800-154904800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:154894800-154905000	Strong transcription	Adipose Nuclei	Adipose
43	chr1:154894800-154905000	Strong transcription	Brain Germinal Matrix	brain
44	chr1:154894800-154905000	Strong transcription	GM12878-XiMat	blood
45	chr1:154895000-154899000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:154895000-154899400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:154895000-154899400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:154895000-154900800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr1:154895000-154901800	Strong transcription	Ovary	ovary
50	chr1:154895000-154901800	Strong transcription	Sigmoid Colon	Sigmoid Colon

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