Variant report

Variant	rs12760148
Chromosome Location	chr1:154918744-154918745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154916244..154918003-chr1:154918672..154920315,2	MCF-7	breast:
2	chr1:154912745..154915347-chr1:154916897..154920361,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CKS1B-3	chr1:154918040-154919219	NONHSAT006646

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1061122	1.00[CHB][hapmap]
rs10908443	1.00[CHB][hapmap]
rs12058480	1.00[CHB][hapmap]
rs1218554	1.00[CHB][hapmap]
rs1218584	1.00[CHB][hapmap]
rs1218585	1.00[CHB][hapmap]
rs1218587	1.00[CHB][hapmap]
rs1218589	1.00[CHB][hapmap]
rs16836525	1.00[CHB][hapmap]
rs2306122	1.00[MEX][hapmap]
rs2878412	1.00[CHB][hapmap]
rs4845396	1.00[CHB][hapmap]
rs4845397	1.00[CHB][hapmap]
rs4845402	1.00[CHB][hapmap]
rs4845403	1.00[LWK][hapmap]
rs6682335	1.00[CHB][hapmap]
rs906596	1.00[CHB][hapmap]
rs906597	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv872453	chr1:154904840-154995503	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154910400-154920000	Weak transcription	Aorta	Aorta
2	chr1:154910400-154923000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:154910400-154925000	Weak transcription	Psoas Muscle	Psoas
4	chr1:154910600-154927200	Weak transcription	Fetal Kidney	kidney
5	chr1:154910800-154927200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:154910800-154927200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:154911000-154921400	Weak transcription	NHLF	lung
8	chr1:154911800-154927400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:154911800-154927400	Weak transcription	NHEK	skin
10	chr1:154912600-154919200	Genic enhancers	Fetal Muscle Leg	muscle
11	chr1:154913000-154920000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:154913000-154927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:154913200-154927400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:154913400-154923000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:154913400-154925600	Weak transcription	Brain Germinal Matrix	brain
16	chr1:154913400-154927000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:154914000-154927400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:154914200-154927400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:154914400-154920000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:154914400-154923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:154914800-154919000	Genic enhancers	Fetal Intestine Small	intestine
22	chr1:154914800-154919000	Genic enhancers	Fetal Muscle Trunk	muscle
23	chr1:154915000-154920200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:154915000-154920400	Weak transcription	Brain Angular Gyrus	brain
25	chr1:154915200-154918800	Weak transcription	HSMM	muscle
26	chr1:154915200-154927400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:154916000-154919000	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr1:154916000-154920400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
29	chr1:154916200-154920000	Weak transcription	Brain Anterior Caudate	brain
30	chr1:154916400-154918800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:154916400-154919000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:154916400-154919200	Genic enhancers	Fetal Stomach	stomach
33	chr1:154916600-154919400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr1:154916800-154919400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:154916800-154920800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:154916800-154921800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:154916800-154923000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:154916800-154923400	Strong transcription	Primary T cells from cord blood	blood
39	chr1:154916800-154923400	Strong transcription	Thymus	Thymus
40	chr1:154916800-154927200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:154917000-154921200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:154917000-154921400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:154917000-154921800	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr1:154917000-154923000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr1:154917200-154919400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:154917200-154920800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:154917200-154921000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:154917200-154921000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:154917200-154921200	Strong transcription	HSMMtube	muscle
50	chr1:154917200-154921400	Strong transcription	Lung	lung

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