Variant report

Variant	rs4845403
Chromosome Location	chr1:154998825-154998826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154996515..154999256-chr1:155005386..155007314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163357	Chromatin interaction
ENSG00000163354	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12566541	1.00[LWK][hapmap]
rs12760148	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154990600-155011200	Weak transcription	Right Atrium	heart
2	chr1:154990800-155003400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:154990800-155003600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:154990800-155016400	Weak transcription	Spleen	Spleen
5	chr1:154992600-155003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:154993400-155000600	Enhancers	Placenta	Placenta
7	chr1:154995800-154999400	Enhancers	HepG2	liver
8	chr1:154995800-155000800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:154997200-154999200	Weak transcription	Pancreas	Pancrea
10	chr1:154998000-155000800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:154998200-154999200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:154998400-155000600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:154998600-154999000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr1:154998600-154999000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:154998600-154999400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:154998600-154999400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:154998600-154999400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:154998600-154999400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:154998600-154999400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:154998600-154999400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:154998600-154999400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:154998600-154999400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:154998600-154999400	Enhancers	HMEC	breast
24	chr1:154998600-154999600	Enhancers	NHEK	skin
25	chr1:154998800-154999000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:154998800-154999000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr1:154998800-154999000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:154998800-154999000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:154998800-154999200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:154998800-154999200	Enhancers	Gastric	stomach
31	chr1:154998800-154999200	Enhancers	HSMM	muscle
32	chr1:154998800-154999400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:154998800-154999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:154998800-154999400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:154998800-154999400	Enhancers	Esophagus	oesophagus
36	chr1:154998800-154999400	Enhancers	Psoas Muscle	Psoas
37	chr1:154998800-154999400	Flanking Active TSS	A549	lung
38	chr1:154998800-154999400	Flanking Active TSS	Hela-S3	cervix
39	chr1:154998800-154999400	Enhancers	K562	blood

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