Variant report

Variant	rs16836677
Chromosome Location	chr2:205726556-205726557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16836679	1.00[ASN][1000 genomes]
rs16836682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17595672	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17638036	1.00[YRI][hapmap]
rs17638380	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2335639	0.81[ASN][1000 genomes]
rs56036505	0.81[ASN][1000 genomes]
rs6757142	0.82[ASN][1000 genomes]
rs73066629	0.80[ASN][1000 genomes]
rs7591697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875724	chr2:205572718-205727222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205719000-205728200	Weak transcription	Gastric	stomach
2	chr2:205719400-205728000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:205722600-205728000	Weak transcription	Aorta	Aorta
4	chr2:205723600-205726800	Weak transcription	Fetal Intestine Small	intestine
5	chr2:205724600-205728800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:205724800-205728400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:205725200-205728800	Weak transcription	Ovary	ovary
8	chr2:205725200-205730000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:205725200-205734600	Weak transcription	Pancreas	Pancrea
10	chr2:205725400-205727800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:205725400-205728600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:205725400-205733600	Weak transcription	Fetal Lung	lung
13	chr2:205725400-205734400	Weak transcription	Adipose Nuclei	Adipose
14	chr2:205725600-205728000	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:205725800-205727400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:205725800-205733400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:205726000-205726600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:205726400-205726600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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