Variant report

Variant	rs16836679
Chromosome Location	chr2:205728051-205728052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205723617..205725301-chr2:205726731..205729723,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16836677	1.00[ASN][1000 genomes]
rs16836682	1.00[ASN][1000 genomes]
rs17638036	1.00[YRI][hapmap]
rs17638885	1.00[EUR][1000 genomes]
rs2335639	0.81[ASN][1000 genomes]
rs4629141	1.00[EUR][1000 genomes]
rs56036505	0.81[ASN][1000 genomes]
rs6757142	0.82[ASN][1000 genomes]
rs73066629	0.80[ASN][1000 genomes]
rs7591697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205719000-205728200	Weak transcription	Gastric	stomach
2	chr2:205724600-205728800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:205724800-205728400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:205725200-205728800	Weak transcription	Ovary	ovary
5	chr2:205725200-205730000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:205725200-205734600	Weak transcription	Pancreas	Pancrea
7	chr2:205725400-205728600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:205725400-205733600	Weak transcription	Fetal Lung	lung
9	chr2:205725400-205734400	Weak transcription	Adipose Nuclei	Adipose
10	chr2:205725800-205733400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:205726600-205728400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:205727400-205729000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:205727800-205728200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:205727800-205728600	Enhancers	Stomach Smooth Muscle	stomach
15	chr2:205727800-205729400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:205728000-205728200	Enhancers	Aorta	Aorta
17	chr2:205728000-205728400	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:205728000-205728600	Enhancers	NHLF	lung
19	chr2:205728000-205728800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:205728000-205729000	Enhancers	Colon Smooth Muscle	Colon

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